Rough water handling is primarily related to hull design and weight of the ski. The skis that handle rough water best have a deep "V" shaped hull and are heavy. The king of rough water is the big Kawasaki 4 storkes, which have very deep hulls and weigh over 1000 lbs.
Unfortunately, there is little you can do to change the hull shape, and 2 stroke skis are considerably lighter than their 4 stroke counterparts.
As far as aftermarket ad ons to improve rough water handling, about the only thing that would make much difference would be changing the intake grate. I think R&D makes a grate for the XL700. Their grates are designed to actively scoop water unlike the stock grate which has a passive design. This results in the ski staying hooked up better in rough water, which results in less bounce. The difference would probably be noticable, but only a slight improvement in the overall handling. It is just impossible to completely overcome the light weight of the ski and the flatter hull design.
Sponsons are involved in turning the ski, and to a small extent stability, but changing them would not improve rough water handling unless you are having problems with the ski porposing. I'd also say you would notice very little improvement in changing the ride plate.
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2008 Yamaha FX HO Cruiser
2010 Hurricane Sundeck 2100
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